Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.49■□□□□ 0.87
MSH4O15457 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.49■□□□□ 0.87
MSH4O15457 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 AC092119.3-201ENST00000612618 583 ntBASIC20.49■□□□□ 0.87
MSH4O15457 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.49■□□□□ 0.87
MSH4O15457 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.49■□□□□ 0.87
MSH4O15457 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MSH4O15457 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.49■□□□□ 0.87
MSH4O15457 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.49■□□□□ 0.87
MSH4O15457 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.48■□□□□ 0.87
MSH4O15457 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 AC132938.6-201ENST00000623828 1655 ntBASIC20.48■□□□□ 0.87
MSH4O15457 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
MSH4O15457 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.48■□□□□ 0.87
MSH4O15457 RN7SL606P-201ENST00000472779 293 ntBASIC20.48■□□□□ 0.87
MSH4O15457 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.48■□□□□ 0.87
MSH4O15457 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.48■□□□□ 0.87
MSH4O15457 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.48■□□□□ 0.87
MSH4O15457 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.48■□□□□ 0.87
MSH4O15457 AP002414.4-201ENST00000589764 1148 ntBASIC20.48■□□□□ 0.87
MSH4O15457 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
MSH4O15457 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
MSH4O15457 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.48■□□□□ 0.87
MSH4O15457 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MSH4O15457 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH4O15457 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
MSH4O15457 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 AC090616.6-201ENST00000582640 721 ntBASIC20.47■□□□□ 0.87
MSH4O15457 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.47■□□□□ 0.87
MSH4O15457 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
MSH4O15457 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
MSH4O15457 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH4O15457 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
MSH4O15457 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH4O15457 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.47■□□□□ 0.87
MSH4O15457 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH4O15457 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
MSH4O15457 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH4O15457 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH4O15457 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH4O15457 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH4O15457 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.46■□□□□ 0.87
MSH4O15457 AL592071.1-201ENST00000611956 408 ntBASIC20.46■□□□□ 0.87
MSH4O15457 IGHV3-41-201ENST00000613121 348 ntBASIC20.46■□□□□ 0.87
MSH4O15457 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
MSH4O15457 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH4O15457 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.46■□□□□ 0.87
MSH4O15457 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH4O15457 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 KRT18P1-202ENST00000452408 1331 ntBASIC20.46■□□□□ 0.87
MSH4O15457 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.46■□□□□ 0.87
MSH4O15457 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
MSH4O15457 AC093010.1-201ENST00000473625 1624 ntBASIC20.45■□□□□ 0.87
MSH4O15457 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
MSH4O15457 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
MSH4O15457 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
MSH4O15457 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms