Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC007375.3-201ENST00000600936 2314 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 KRT18P41-201ENST00000518924 1277 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AC064836.3-201ENST00000607928 673 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL6A6A6NMZ7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AC092474.2-201ENST00000424288 719 ntBASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AL137060.1-201ENST00000618151 2648 ntBASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AC099778.1-201ENST00000568593 1911 ntBASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 MEIS3P1-201ENST00000495167 958 ntBASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.4■□□□□ 0.22
COL6A6A6NMZ7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL6A6A6NMZ7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 AC015922.1-201ENST00000421102 1152 ntBASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.39■□□□□ 0.21
COL6A6A6NMZ7 PGM5P2-202ENST00000637225 1043 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms