Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 AL691403.2-201ENST00000618460 490 ntBASIC31.58■■■□□ 2.65
CCDC88BA6NC98 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC31.57■■■□□ 2.65
CCDC88BA6NC98 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 AC132938.6-201ENST00000623828 1655 ntBASIC31.57■■■□□ 2.64
CCDC88BA6NC98 SOD2-201ENST00000337404 991 ntTSL 2 BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 AC007967.3-201ENST00000434308 558 ntBASIC31.57■■■□□ 2.64
CCDC88BA6NC98 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC88BA6NC98 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 KRT18P27-201ENST00000427733 1299 ntBASIC31.56■■■□□ 2.64
CCDC88BA6NC98 FIS1-203ENST00000442303 631 ntTSL 3 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 UNC93B6-202ENST00000528242 690 ntBASIC31.56■■■□□ 2.64
CCDC88BA6NC98 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 CAND2-206ENST00000626378 333 ntTSL 5 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
CCDC88BA6NC98 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
CCDC88BA6NC98 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 RPS29-206ENST00000557111 488 ntTSL 2 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 HOTTIP_1.1-201ENST00000620415 57 ntBASIC31.54■■■□□ 2.64
CCDC88BA6NC98 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC88BA6NC98 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 AC073592.4-201ENST00000623827 446 ntBASIC31.53■■■□□ 2.64
CCDC88BA6NC98 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC88BA6NC98 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC005332.7-201ENST00000614046 2005 ntBASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC079776.2-201ENST00000641154 1609 ntBASIC31.52■■■□□ 2.64
CCDC88BA6NC98 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 HMGN1P19-201ENST00000436976 333 ntBASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC009947.1-201ENST00000444350 727 ntBASIC31.52■■■□□ 2.64
CCDC88BA6NC98 KRT18P3-201ENST00000451602 1288 ntBASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC105339.3-201ENST00000560043 636 ntBASIC31.52■■■□□ 2.64
CCDC88BA6NC98 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC31.52■■■□□ 2.64
CCDC88BA6NC98 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC31.51■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms