Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AL390955.1-201ENST00000428694 934 ntBASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AC007663.1-201ENST00000438948 1240 ntBASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 C2orf69P3-201ENST00000565542 1120 ntBASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 REXO1L9P-201ENST00000604264 2108 ntBASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 MIR1238-201ENST00000408483 83 ntBASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 SLC25A6P5-201ENST00000435663 894 ntBASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 SNORA78-201ENST00000459373 127 ntBASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 AL355075.4-201ENST00000554988 638 ntBASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 AC010653.2-201ENST00000623505 997 ntBASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HIF3AQ9Y2N7 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 TSPY14P-201ENST00000303979 915 ntBASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HIF3AQ9Y2N7 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms