Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC092865.7-201ENST00000641832 219 ntBASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS9D1Q9Y2B5 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 NOC2LP1-202ENST00000452600 2235 ntBASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 ECEL1P3-201ENST00000427961 737 ntBASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS9D1Q9Y2B5 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
VPS9D1Q9Y2B5 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VPS9D1Q9Y2B5 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 AC087499.1-201ENST00000418141 1075 ntBASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 SEC1P-202ENST00000473944 940 ntBASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VPS9D1Q9Y2B5 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS9D1Q9Y2B5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms