Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SDHAP2-201ENST00000455183 2001 ntBASIC16.38■□□□□ 0.21
VSX1Q9NZR4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VSX1Q9NZR4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AL390955.1-201ENST00000428694 934 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 SLC25A6P5-201ENST00000435663 894 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC007663.1-201ENST00000438948 1240 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 SNORA78-201ENST00000459373 127 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 C2orf69P3-201ENST00000565542 1120 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AL133373.2-201ENST00000623187 2828 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC138028.4-201ENST00000564984 1845 ntBASIC16.37■□□□□ 0.21
VSX1Q9NZR4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VSX1Q9NZR4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 TSPY14P-201ENST00000303979 915 ntBASIC16.36■□□□□ 0.21
VSX1Q9NZR4 MIR1238-201ENST00000408483 83 ntBASIC16.36■□□□□ 0.21
VSX1Q9NZR4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 AL355075.4-201ENST00000554988 638 ntBASIC16.36■□□□□ 0.21
VSX1Q9NZR4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 AC010653.2-201ENST00000623505 997 ntBASIC16.36■□□□□ 0.21
VSX1Q9NZR4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.36■□□□□ 0.21
VSX1Q9NZR4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms