Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
SMARCAL1Q9NZC9 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 NIFKP9-201ENST00000419265 221 ntBASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 AC110285.5-201ENST00000611501 352 ntBASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCAL1Q9NZC9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 AC090340.1-201ENST00000620778 4980 ntBASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 ABHD17AP1-201ENST00000358206 933 ntBASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 AC133681.1-201ENST00000465482 601 ntBASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 RPPH1-201ENST00000516869 333 ntBASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
SMARCAL1Q9NZC9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 PRORSD1P-201ENST00000295112 541 ntBASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 AC004951.3-201ENST00000418645 1148 ntBASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 KRT18P41-201ENST00000518924 1277 ntBASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 CKBP1-201ENST00000565489 1086 ntBASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 AC022211.2-201ENST00000585075 2527 ntBASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMARCAL1Q9NZC9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms