Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 AC125437.2-201ENST00000625180 2167 ntBASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 KRT18P27-201ENST00000427733 1299 ntBASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 SNHG9-202ENST00000564014 471 ntBASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 COX5A-206ENST00000568783 571 ntTSL 3 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 AC005829.1-201ENST00000570002 483 ntBASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.86■■□□□ 1.09
ZNF541Q9H0D2 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 LINC00602-201ENST00000629776 2065 ntBASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 FAM8A3P-201ENST00000427218 844 ntBASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 AP000867.4-201ENST00000641616 219 ntBASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ZNF541Q9H0D2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 AC108751.1-201ENST00000490852 363 ntBASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 SDHAP2-201ENST00000455183 2001 ntBASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
ZNF541Q9H0D2 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 AL035633.1-201ENST00000406139 838 ntBASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
ZNF541Q9H0D2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF541Q9H0D2 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF541Q9H0D2 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF541Q9H0D2 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
ZNF541Q9H0D2 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ZNF541Q9H0D2 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.83■■□□□ 1.08
ZNF541Q9H0D2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 AC073621.1-201ENST00000392730 636 ntBASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.82■■□□□ 1.08
ZNF541Q9H0D2 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms