Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 UPK3BP1-201ENST00000428678 509 ntBASIC16.8■□□□□ 0.28
TIMP4Q99727 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.8■□□□□ 0.28
TIMP4Q99727 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.8■□□□□ 0.28
TIMP4Q99727 SEC1P-202ENST00000473944 940 ntBASIC16.8■□□□□ 0.28
TIMP4Q99727 ZNF444P1-201ENST00000559497 298 ntBASIC16.8■□□□□ 0.28
TIMP4Q99727 AL136038.3-201ENST00000561909 1096 ntBASIC16.8■□□□□ 0.28
TIMP4Q99727 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.8■□□□□ 0.28
TIMP4Q99727 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.8■□□□□ 0.28
TIMP4Q99727 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TIMP4Q99727 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.8■□□□□ 0.28
TIMP4Q99727 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
TIMP4Q99727 AC083849.1-201ENST00000615227 514 ntBASIC16.8■□□□□ 0.28
TIMP4Q99727 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TIMP4Q99727 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TIMP4Q99727 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.8■□□□□ 0.28
TIMP4Q99727 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TIMP4Q99727 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TIMP4Q99727 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TIMP4Q99727 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 AC005332.1-201ENST00000577698 1310 ntBASIC16.79■□□□□ 0.28
TIMP4Q99727 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 MIR564-202ENST00000385049 94 ntBASIC16.79■□□□□ 0.28
TIMP4Q99727 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.79■□□□□ 0.28
TIMP4Q99727 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.79■□□□□ 0.28
TIMP4Q99727 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.79■□□□□ 0.28
TIMP4Q99727 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.79■□□□□ 0.28
TIMP4Q99727 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.79■□□□□ 0.28
TIMP4Q99727 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.79■□□□□ 0.28
TIMP4Q99727 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
TIMP4Q99727 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.79■□□□□ 0.28
TIMP4Q99727 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.79■□□□□ 0.28
TIMP4Q99727 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.79■□□□□ 0.28
TIMP4Q99727 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TIMP4Q99727 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 LTB4R2-202ENST00000528054 3092 ntBASIC16.78■□□□□ 0.28
TIMP4Q99727 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 IER3-202ENST00000376377 1350 ntBASIC16.78■□□□□ 0.28
TIMP4Q99727 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.78■□□□□ 0.28
TIMP4Q99727 AC008764.6-201ENST00000595909 2069 ntBASIC16.78■□□□□ 0.28
TIMP4Q99727 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 VENTXP5-201ENST00000523979 775 ntBASIC16.78■□□□□ 0.28
TIMP4Q99727 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.78■□□□□ 0.28
TIMP4Q99727 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.78■□□□□ 0.28
TIMP4Q99727 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.78■□□□□ 0.28
TIMP4Q99727 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.78■□□□□ 0.28
TIMP4Q99727 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TIMP4Q99727 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.78■□□□□ 0.28
TIMP4Q99727 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TIMP4Q99727 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.78■□□□□ 0.28
TIMP4Q99727 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.78■□□□□ 0.28
TIMP4Q99727 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 KRT8P7-201ENST00000533003 1432 ntBASIC16.78■□□□□ 0.28
TIMP4Q99727 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TIMP4Q99727 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms