Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 GPAT2P1-201ENST00000444924 1672 ntBASIC19.78■□□□□ 0.76
CCDC42Q96M95 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 PKD1P1-201ENST00000458669 6805 ntBASIC19.78■□□□□ 0.76
CCDC42Q96M95 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.78■□□□□ 0.76
CCDC42Q96M95 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC42Q96M95 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 KRT8P50-201ENST00000562022 1438 ntBASIC19.77■□□□□ 0.76
CCDC42Q96M95 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.77■□□□□ 0.76
CCDC42Q96M95 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC42Q96M95 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC42Q96M95 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 RPPH1-201ENST00000516869 333 ntBASIC19.77■□□□□ 0.76
CCDC42Q96M95 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC42Q96M95 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC42Q96M95 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC42Q96M95 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC42Q96M95 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
CCDC42Q96M95 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC42Q96M95 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 AC099343.3-201ENST00000605834 2503 ntBASIC19.76■□□□□ 0.75
CCDC42Q96M95 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 MESTP1-201ENST00000404287 994 ntBASIC19.76■□□□□ 0.75
CCDC42Q96M95 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC42Q96M95 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC42Q96M95 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC42Q96M95 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC42Q96M95 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms