Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 AC008622.2-201ENST00000617006 1229 ntBASIC17.54■□□□□ 0.4
VMP1Q96GC9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.54■□□□□ 0.4
VMP1Q96GC9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VMP1Q96GC9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 AL031598.1-201ENST00000561511 1773 ntBASIC17.53■□□□□ 0.4
VMP1Q96GC9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 AL138966.2-201ENST00000621997 464 ntBASIC17.53■□□□□ 0.4
VMP1Q96GC9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
VMP1Q96GC9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VMP1Q96GC9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
VMP1Q96GC9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.52■□□□□ 0.4
VMP1Q96GC9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 AC106820.2-201ENST00000563775 3264 ntBASIC17.52■□□□□ 0.4
VMP1Q96GC9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
VMP1Q96GC9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 BX664615.1-201ENST00000443558 458 ntBASIC17.52■□□□□ 0.4
VMP1Q96GC9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.52■□□□□ 0.4
VMP1Q96GC9 MIR4674-201ENST00000582457 87 ntBASIC17.52■□□□□ 0.4
VMP1Q96GC9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VMP1Q96GC9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
VMP1Q96GC9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VMP1Q96GC9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms