Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SUPT6H-206ENST00000581510 1194 ntTSL 520.8■□□□□ 0.923e-6■□□□□ 10.3
DDX55Q8NHQ9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.914e-13■□□□□ 10.3
DDX55Q8NHQ9 C11orf98-203ENST00000532786 774 ntTSL 220.7■□□□□ 0.94e-13■□□□□ 10.3
DDX55Q8NHQ9 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.894e-10■□□□□ 10.3
DDX55Q8NHQ9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.849e-7■□□□□ 10.3
DDX55Q8NHQ9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.65■□□□□ 0.749e-7■□□□□ 10.3
DDX55Q8NHQ9 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.37■□□□□ 0.692e-8■□□□□ 10.3
DDX55Q8NHQ9 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.634e-13■□□□□ 10.3
DDX55Q8NHQ9 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.64e-13■□□□□ 10.3
DDX55Q8NHQ9 YPEL3-211ENST00000568681 1739 ntTSL 218.7■□□□□ 0.582e-8■□□□□ 10.3
DDX55Q8NHQ9 CDC34-204ENST00000593036 359 ntTSL 318.7■□□□□ 0.589e-7■□□□□ 10.3
DDX55Q8NHQ9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.45■□□□□ 0.549e-7■□□□□ 10.3
DDX55Q8NHQ9 CLCN7-209ENST00000565092 2740 ntTSL 217.39■□□□□ 0.376e-6■□□□□ 10.3
DDX55Q8NHQ9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.276e-6■□□□□ 10.3
DDX55Q8NHQ9 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.68■□□□□ 0.264e-10■□□□□ 10.3
DDX55Q8NHQ9 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.267e-8■□□□□ 10.3
DDX55Q8NHQ9 DGAT1-203ENST00000524965 1336 ntTSL 516.65■□□□□ 0.267e-8■□□□□ 10.3
DDX55Q8NHQ9 CD151-218ENST00000530726 1407 ntTSL 516.31■□□□□ 0.24e-10■□□□□ 10.3
DDX55Q8NHQ9 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.22■□□□□ 0.192e-8■□□□□ 10.3
DDX55Q8NHQ9 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.2■□□□□ 0.189e-7■□□□□ 10.3
DDX55Q8NHQ9 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC16.16■□□□□ 0.189e-7■□□□□ 10.3
DDX55Q8NHQ9 CHD3-211ENST00000481999 2515 ntTSL 215.95■□□□□ 0.149e-7■□□□□ 10.3
DDX55Q8NHQ9 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.119e-7■□□□□ 10.3
DDX55Q8NHQ9 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.094e-21■□□□□ 10.3
DDX55Q8NHQ9 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.18■□□□□ 0.026e-6■□□□□ 10.3
DDX55Q8NHQ9 ATF6B-211ENST00000453203 425 ntTSL 515.11■□□□□ 0.019e-7■□□□□ 10.3
DDX55Q8NHQ9 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC15.05■□□□□ -04e-21■□□□□ 10.3
DDX55Q8NHQ9 ILK-211ENST00000530016 1696 ntTSL 215□□□□□ -0.019e-7■□□□□ 10.3
DDX55Q8NHQ9 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.92□□□□□ -0.026e-6■□□□□ 10.3
DDX55Q8NHQ9 CLCN7-205ENST00000563642 4184 ntTSL 214.77□□□□□ -0.056e-6■□□□□ 10.3
DDX55Q8NHQ9 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.152e-8■□□□□ 10.3
DDX55Q8NHQ9 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC13.9□□□□□ -0.182e-8■□□□□ 10.3
DDX55Q8NHQ9 LRRC41-204ENST00000496156 892 ntTSL 513.8□□□□□ -0.24e-21■□□□□ 10.3
DDX55Q8NHQ9 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC13.66□□□□□ -0.224e-21■□□□□ 10.3
DDX55Q8NHQ9 LBHD1-204ENST00000431002 2915 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.244e-13■□□□□ 10.3
DDX55Q8NHQ9 GOT2-201ENST00000245206 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.364e-10■□□□□ 10.3
DDX55Q8NHQ9 LRRC41-207ENST00000617190 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.454e-21■□□□□ 10.3
DDX55Q8NHQ9 GFI1B-201ENST00000339463 2449 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.499e-7■□□□□ 10.3
DDX55Q8NHQ9 ABHD5-206ENST00000463153 631 ntTSL 211.81□□□□□ -0.522e-10■□□□□ 10.3
DDX55Q8NHQ9 CD151-205ENST00000525181 364 ntTSL 311.44□□□□□ -0.584e-10■□□□□ 10.3
DDX55Q8NHQ9 LRRC41-203ENST00000472710 4455 ntTSL 211.26□□□□□ -0.614e-21■□□□□ 10.3
DDX55Q8NHQ9 ATG13-207ENST00000526508 4199 ntTSL 5 BASIC11.25□□□□□ -0.619e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-202ENST00000311275 5362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.629e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-217ENST00000536340 5273 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.659e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-205ENST00000360911 4991 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.659e-7■□□□□ 10.3
DDX55Q8NHQ9 TBPL1-201ENST00000237264 4228 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.724e-10■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-215ENST00000468376 4064 ntTSL 1 (best)10.54□□□□□ -0.729e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC10.44□□□□□ -0.749e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-220ENST00000617418 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.779e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-214ENST00000467200 3634 ntAPPRIS ALT2 TSL 1 (best)10.09□□□□□ -0.799e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC9.88□□□□□ -0.839e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.99e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.919e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-219ENST00000611941 5090 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.929e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.949e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-201ENST00000262975 4139 ntAPPRIS ALT2 TSL 1 (best) BASIC9.17□□□□□ -0.949e-7■□□□□ 10.3
DDX55Q8NHQ9 ATG13-201ENST00000359513 4348 ntTSL 1 (best) BASIC9.11□□□□□ -0.959e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.979e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -19e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC8.81□□□□□ -19e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.019e-7■□□□□ 10.3
DDX55Q8NHQ9 ATG13-203ENST00000524625 4014 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.019e-7■□□□□ 10.3
DDX55Q8NHQ9 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.129e-7■□□□□ 10.3
DDX55Q8NHQ9 TBPL1-206ENST00000477527 634 ntTSL 55.92□□□□□ -1.464e-10■□□□□ 10.3
DDX55Q8NHQ9 ZFP36L1-202ENST00000439696 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.392e-14■□□□□ 10.3
DDX55Q8NHQ9 ZFP36L1-204ENST00000555997 3094 ntTSL 3 BASIC11.56□□□□□ -0.562e-14■□□□□ 10.3
DDX55Q8NHQ9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.25e-8■□□□□ 10.3
DDX55Q8NHQ9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC27.78■■■□□ 2.045e-8■□□□□ 10.3
DDX55Q8NHQ9 FAM96B-202ENST00000562362 713 ntTSL 326.42■■□□□ 1.825e-8■□□□□ 10.3
DDX55Q8NHQ9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC25.04■■□□□ 1.65e-8■□□□□ 10.3
DDX55Q8NHQ9 SLC25A39-204ENST00000585523 574 ntTSL 424.39■■□□□ 1.495e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-206ENST00000582449 1518 ntTSL 223.6■■□□□ 1.377e-32■□□□□ 10.3
DDX55Q8NHQ9 PTDSS1-201ENST00000337004 2366 ntTSL 1 (best)22.36■■□□□ 1.175e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.077e-32■□□□□ 10.3
DDX55Q8NHQ9 NXF1-206ENST00000527902 619 ntTSL 321.44■■□□□ 1.025e-8■□□□□ 10.3
DDX55Q8NHQ9 NXF1-216ENST00000533499 936 ntTSL 520.7■□□□□ 0.95e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-204ENST00000452355 1357 ntTSL 519.51■□□□□ 0.717e-32■□□□□ 10.3
DDX55Q8NHQ9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.595e-8■□□□□ 10.3
DDX55Q8NHQ9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.475e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-208ENST00000585202 1359 ntTSL 317.71■□□□□ 0.437e-32■□□□□ 10.3
DDX55Q8NHQ9 NXF1-214ENST00000533048 922 ntTSL 517.29■□□□□ 0.365e-8■□□□□ 10.3
DDX55Q8NHQ9 FAM96B-204ENST00000567511 696 ntTSL 517.22■□□□□ 0.355e-8■□□□□ 10.3
DDX55Q8NHQ9 FAM96B-203ENST00000563490 718 ntTSL 216.37■□□□□ 0.215e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.17e-32■□□□□ 10.3
DDX55Q8NHQ9 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.085e-8■□□□□ 10.3
DDX55Q8NHQ9 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.035e-8■□□□□ 10.3
DDX55Q8NHQ9 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.25e-8■□□□□ 10.3
DDX55Q8NHQ9 FAM96B-205ENST00000568572 446 ntTSL 513.62□□□□□ -0.235e-8■□□□□ 10.3
DDX55Q8NHQ9 ACLY-204ENST00000537919 2974 ntTSL 2 BASIC13.02□□□□□ -0.325e-8■□□□□ 10.3
DDX55Q8NHQ9 ACLY-203ENST00000393896 3682 ntAPPRIS ALT1 TSL 2 BASIC12.15□□□□□ -0.465e-8■□□□□ 10.3
DDX55Q8NHQ9 NXF1-211ENST00000531709 4128 ntTSL 1 (best) BASIC11.81□□□□□ -0.525e-8■□□□□ 10.3
DDX55Q8NHQ9 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC9.95□□□□□ -0.825e-8■□□□□ 10.3
DDX55Q8NHQ9 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC9.87□□□□□ -0.835e-8■□□□□ 10.3
DDX55Q8NHQ9 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC9.34□□□□□ -0.915e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-210ENST00000589919 595 ntTSL 28.09□□□□□ -1.117e-32■□□□□ 10.3
DDX55Q8NHQ9 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.155e-8■□□□□ 10.3
DDX55Q8NHQ9 NXF1-205ENST00000527497 529 ntTSL 26.86□□□□□ -1.315e-8■□□□□ 10.3
DDX55Q8NHQ9 SRSF2-209ENST00000586778 1001 ntTSL 24.68□□□□□ -1.667e-32■□□□□ 10.3
DDX55Q8NHQ9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.45■□□□□ 0.862e-8■□□□□ 10.3
DDX55Q8NHQ9 CCND3-216ENST00000511686 576 ntTSL 318.66■□□□□ 0.582e-8■□□□□ 10.3
Retrieved 100 of 15,504 protein–RNA pairs in 115 ms