Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC44A3Q8N4M1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC44A3Q8N4M1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC44A3Q8N4M1 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC44A3Q8N4M1 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.71■□□□□ 0.59
SLC44A3Q8N4M1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SLC44A3Q8N4M1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SLC44A3Q8N4M1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SLC44A3Q8N4M1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
SLC44A3Q8N4M1 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 MTCL1P1-201ENST00000446207 792 ntBASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AC012640.2-201ENST00000561606 901 ntBASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AC010327.4-202ENST00000591484 748 ntBASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC44A3Q8N4M1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 KRT18P3-201ENST00000451602 1288 ntBASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 AC112482.1-201ENST00000492080 688 ntBASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 OR7E14P-202ENST00000530490 1290 ntBASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SLC44A3Q8N4M1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 AC125634.1-201ENST00000438758 1403 ntBASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 RNA5SP415-201ENST00000517246 115 ntBASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 AP001160.2-201ENST00000596071 487 ntBASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 AL355385.1-201ENST00000606123 409 ntBASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 Z83851.2-201ENST00000609564 659 ntBASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms