Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 BX323043.1-201ENST00000641006 1765 ntBASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 LINC00602-201ENST00000629776 2065 ntBASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 IGHV3-47-201ENST00000425060 335 ntBASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 AC104819.1-201ENST00000504587 486 ntBASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC60Q8IWA6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 ESPNP-201ENST00000270691 2015 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 TNXA-203ENST00000507684 2038 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 AC087289.5-201ENST00000586076 3175 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 KRT17P6-201ENST00000453795 1220 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 UNC93B7-201ENST00000509439 705 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 FOSL1P1-201ENST00000511041 816 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 Z69720.1-201ENST00000601483 472 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 AL732292.2-201ENST00000609649 430 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 AL353801.3-201ENST00000609898 542 ntBASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC60Q8IWA6 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 AC073592.3-201ENST00000625118 1834 ntBASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 TSPY12P-201ENST00000421279 868 ntBASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CCDC60Q8IWA6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms