Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 HLA-F-220ENST00000434407 884 ntBASIC17.9■□□□□ 0.46
VRK3Q8IV63 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 AL049597.2-201ENST00000565575 961 ntBASIC17.9■□□□□ 0.46
VRK3Q8IV63 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.9■□□□□ 0.46
VRK3Q8IV63 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.9■□□□□ 0.46
VRK3Q8IV63 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VRK3Q8IV63 AL390961.4-201ENST00000623958 2535 ntBASIC17.9■□□□□ 0.46
VRK3Q8IV63 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.89■□□□□ 0.46
VRK3Q8IV63 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.89■□□□□ 0.46
VRK3Q8IV63 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 HBZP1-201ENST00000354915 429 ntBASIC17.89■□□□□ 0.45
VRK3Q8IV63 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 SPDYE13P-201ENST00000445314 798 ntBASIC17.89■□□□□ 0.45
VRK3Q8IV63 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 ABALON-201ENST00000629058 1903 ntBASIC17.89■□□□□ 0.45
VRK3Q8IV63 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
VRK3Q8IV63 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VRK3Q8IV63 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 AL096828.2-201ENST00000567259 1965 ntBASIC17.88■□□□□ 0.45
VRK3Q8IV63 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 VENTXP5-201ENST00000523979 775 ntBASIC17.88■□□□□ 0.45
VRK3Q8IV63 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.88■□□□□ 0.45
VRK3Q8IV63 REXO1L9P-201ENST00000604264 2108 ntBASIC17.88■□□□□ 0.45
VRK3Q8IV63 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.88■□□□□ 0.45
VRK3Q8IV63 AC083849.1-201ENST00000615227 514 ntBASIC17.88■□□□□ 0.45
VRK3Q8IV63 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VRK3Q8IV63 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VRK3Q8IV63 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.87■□□□□ 0.45
VRK3Q8IV63 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 NTF6B-201ENST00000591913 560 ntBASIC17.87■□□□□ 0.45
VRK3Q8IV63 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.87■□□□□ 0.45
VRK3Q8IV63 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms