Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP48Q86UV5 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC22.43■■□□□ 1.18
USP48Q86UV5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.43■■□□□ 1.18
USP48Q86UV5 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.43■■□□□ 1.18
USP48Q86UV5 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP48Q86UV5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
USP48Q86UV5 AC104417.2-201ENST00000562989 1793 ntBASIC22.43■■□□□ 1.18
USP48Q86UV5 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC22.43■■□□□ 1.18
USP48Q86UV5 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
USP48Q86UV5 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
USP48Q86UV5 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 MCCD1P1-208ENST00000445732 328 ntBASIC22.42■■□□□ 1.18
USP48Q86UV5 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.42■■□□□ 1.18
USP48Q86UV5 AC099336.1-202ENST00000602961 463 ntBASIC22.42■■□□□ 1.18
USP48Q86UV5 IGHV3-41-201ENST00000613121 348 ntBASIC22.42■■□□□ 1.18
USP48Q86UV5 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
USP48Q86UV5 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
USP48Q86UV5 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.42■■□□□ 1.18
USP48Q86UV5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
USP48Q86UV5 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.41■■□□□ 1.18
USP48Q86UV5 USP49-202ENST00000373010 2446 ntTSL 5 BASIC22.41■■□□□ 1.18
USP48Q86UV5 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
USP48Q86UV5 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.41■■□□□ 1.18
USP48Q86UV5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC22.41■■□□□ 1.18
USP48Q86UV5 TK1-205ENST00000590862 642 ntTSL 3 BASIC22.41■■□□□ 1.18
USP48Q86UV5 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
USP48Q86UV5 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC22.41■■□□□ 1.18
USP48Q86UV5 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
USP48Q86UV5 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
USP48Q86UV5 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC22.4■■□□□ 1.18
USP48Q86UV5 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 AKR1C7P-201ENST00000305623 895 ntBASIC22.4■■□□□ 1.18
USP48Q86UV5 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
USP48Q86UV5 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
USP48Q86UV5 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC22.4■■□□□ 1.18
USP48Q86UV5 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
USP48Q86UV5 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
USP48Q86UV5 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP48Q86UV5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.39■■□□□ 1.18
USP48Q86UV5 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
USP48Q86UV5 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.39■■□□□ 1.18
USP48Q86UV5 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC22.39■■□□□ 1.17
USP48Q86UV5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 PMS2P1-201ENST00000431037 1228 ntBASIC22.39■■□□□ 1.17
USP48Q86UV5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.39■■□□□ 1.17
USP48Q86UV5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC22.39■■□□□ 1.17
USP48Q86UV5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC22.39■■□□□ 1.17
USP48Q86UV5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC22.39■■□□□ 1.17
USP48Q86UV5 AC090616.6-201ENST00000582640 721 ntBASIC22.39■■□□□ 1.17
USP48Q86UV5 AC005332.3-201ENST00000589904 676 ntBASIC22.39■■□□□ 1.17
USP48Q86UV5 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC22.39■■□□□ 1.17
USP48Q86UV5 LITAF-220ENST00000620789 692 ntTSL 5 BASIC22.39■■□□□ 1.17
USP48Q86UV5 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
USP48Q86UV5 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
USP48Q86UV5 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC22.39■■□□□ 1.17
USP48Q86UV5 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.39■■□□□ 1.17
USP48Q86UV5 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP48Q86UV5 AC233702.3-201ENST00000578656 1387 ntBASIC22.38■■□□□ 1.17
USP48Q86UV5 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP48Q86UV5 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP48Q86UV5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.38■■□□□ 1.17
USP48Q86UV5 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
USP48Q86UV5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms