Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.67■□□□□ 0.42
PCDH1Q08174 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.67■□□□□ 0.42
PCDH1Q08174 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH1Q08174 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH1Q08174 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH1Q08174 AC097493.4-201ENST00000641197 219 ntBASIC17.67■□□□□ 0.42
PCDH1Q08174 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDH1Q08174 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH1Q08174 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
PCDH1Q08174 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDH1Q08174 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDH1Q08174 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 BCL2-203ENST00000589955 5011 ntBASIC17.66■□□□□ 0.42
PCDH1Q08174 NOC2LP2-201ENST00000407594 1944 ntBASIC17.66■□□□□ 0.42
PCDH1Q08174 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PCDH1Q08174 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDH1Q08174 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDH1Q08174 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
PCDH1Q08174 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDH1Q08174 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDH1Q08174 MIR3917-201ENST00000580971 93 ntBASIC17.66■□□□□ 0.42
PCDH1Q08174 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
PCDH1Q08174 AL024508.2-201ENST00000607749 1894 ntBASIC17.66■□□□□ 0.42
PCDH1Q08174 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
PCDH1Q08174 FLJ13224-201ENST00000313737 1514 ntBASIC17.66■□□□□ 0.42
PCDH1Q08174 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH1Q08174 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 HTR7P1-202ENST00000624664 4411 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PCDH1Q08174 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH1Q08174 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH1Q08174 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDH1Q08174 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
PCDH1Q08174 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDH1Q08174 AC141257.4-201ENST00000634557 245 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 AC136944.6-201ENST00000634818 245 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PCDH1Q08174 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH1Q08174 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PCDH1Q08174 AC093010.1-201ENST00000473625 1624 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 LINC01126-201ENST00000623515 1646 ntBASIC17.65■□□□□ 0.42
PCDH1Q08174 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH1Q08174 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH1Q08174 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PCDH1Q08174 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PCDH1Q08174 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH1Q08174 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 AC138028.4-201ENST00000564984 1845 ntBASIC17.64■□□□□ 0.41
PCDH1Q08174 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH1Q08174 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH1Q08174 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms