Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDH11P55287 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CDH11P55287 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CDH11P55287 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CDH11P55287 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CDH11P55287 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.81■□□□□ 0.28
CDH11P55287 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CDH11P55287 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDH11P55287 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH11P55287 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH11P55287 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CDH11P55287 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
CDH11P55287 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 FITM1-202ENST00000559294 800 ntBASIC16.8■□□□□ 0.28
CDH11P55287 NAPSB-206ENST00000562112 1266 ntBASIC16.8■□□□□ 0.28
CDH11P55287 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.8■□□□□ 0.28
CDH11P55287 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.8■□□□□ 0.28
CDH11P55287 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.8■□□□□ 0.28
CDH11P55287 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CDH11P55287 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 AC112777.1-201ENST00000540175 1423 ntBASIC16.79■□□□□ 0.28
CDH11P55287 KRT8P9-201ENST00000558927 1449 ntBASIC16.79■□□□□ 0.28
CDH11P55287 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.79■□□□□ 0.28
CDH11P55287 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.79■□□□□ 0.28
CDH11P55287 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.79■□□□□ 0.28
CDH11P55287 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.79■□□□□ 0.28
CDH11P55287 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 MIR1224-201ENST00000408193 85 ntBASIC16.79■□□□□ 0.28
CDH11P55287 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.79■□□□□ 0.28
CDH11P55287 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 AC004980.1-204ENST00000429707 299 ntBASIC16.79■□□□□ 0.28
CDH11P55287 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH11P55287 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 AC145285.6-201ENST00000604632 637 ntBASIC16.79■□□□□ 0.28
CDH11P55287 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.79■□□□□ 0.28
CDH11P55287 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 GNAS-203ENST00000306120 1878 ntBASIC16.79■□□□□ 0.28
CDH11P55287 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CDH11P55287 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.79■□□□□ 0.28
CDH11P55287 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CDH11P55287 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDH11P55287 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH11P55287 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CDH11P55287 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 B3GAT3P1-201ENST00000471720 806 ntBASIC16.78■□□□□ 0.28
CDH11P55287 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH11P55287 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDH11P55287 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDH11P55287 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH11P55287 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH11P55287 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH11P55287 KRT8P32-201ENST00000512863 1461 ntBASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms