Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
CHRNA3P32297 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.33■□□□□ 0.68
CHRNA3P32297 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CHRNA3P32297 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.33■□□□□ 0.68
CHRNA3P32297 FAM87A-204ENST00000613235 858 ntBASIC19.33■□□□□ 0.68
CHRNA3P32297 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.33■□□□□ 0.68
CHRNA3P32297 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
CHRNA3P32297 AC008556.1-201ENST00000610908 2040 ntBASIC19.33■□□□□ 0.68
CHRNA3P32297 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CHRNA3P32297 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.33■□□□□ 0.68
CHRNA3P32297 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.33■□□□□ 0.68
CHRNA3P32297 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
CHRNA3P32297 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHRNA3P32297 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.33■□□□□ 0.68
CHRNA3P32297 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.33■□□□□ 0.68
CHRNA3P32297 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.33■□□□□ 0.68
CHRNA3P32297 AC138028.4-201ENST00000564984 1845 ntBASIC19.32■□□□□ 0.68
CHRNA3P32297 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CHRNA3P32297 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA3P32297 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHRNA3P32297 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.32■□□□□ 0.68
CHRNA3P32297 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CHRNA3P32297 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA3P32297 CA15P1-201ENST00000481698 905 ntBASIC19.32■□□□□ 0.68
CHRNA3P32297 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA3P32297 AL023803.3-201ENST00000615559 522 ntBASIC19.32■□□□□ 0.68
CHRNA3P32297 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA3P32297 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.32■□□□□ 0.68
CHRNA3P32297 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CHRNA3P32297 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.32■□□□□ 0.68
CHRNA3P32297 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
CHRNA3P32297 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CHRNA3P32297 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHRNA3P32297 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CHRNA3P32297 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 LIN28AP1-201ENST00000429574 405 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.31■□□□□ 0.68
CHRNA3P32297 AC007663.1-201ENST00000438948 1240 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 KRT18P57-201ENST00000443599 1254 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 TSPY17P-201ENST00000450329 467 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 AC010203.1-204ENST00000548782 407 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 AC092338.2-201ENST00000568827 1415 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 AC073508.3-201ENST00000619697 1419 ntBASIC19.31■□□□□ 0.68
CHRNA3P32297 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHRNA3P32297 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHRNA3P32297 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CHRNA3P32297 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CHRNA3P32297 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA3P32297 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA3P32297 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHRNA3P32297 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CHRNA3P32297 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.3■□□□□ 0.68
CHRNA3P32297 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.3■□□□□ 0.68
CHRNA3P32297 AC010653.2-201ENST00000623505 997 ntBASIC19.3■□□□□ 0.68
CHRNA3P32297 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
CHRNA3P32297 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms