Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.41■□□□□ 0.54
PTPN4P29074 SLC25A6P5-201ENST00000435663 894 ntBASIC18.41■□□□□ 0.54
PTPN4P29074 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.41■□□□□ 0.54
PTPN4P29074 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.41■□□□□ 0.54
PTPN4P29074 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
PTPN4P29074 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
PTPN4P29074 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PTPN4P29074 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PTPN4P29074 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PTPN4P29074 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PTPN4P29074 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.4■□□□□ 0.54
PTPN4P29074 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
PTPN4P29074 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
PTPN4P29074 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.4■□□□□ 0.54
PTPN4P29074 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
PTPN4P29074 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
PTPN4P29074 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.4■□□□□ 0.54
PTPN4P29074 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.4■□□□□ 0.54
PTPN4P29074 AL049597.2-201ENST00000565575 961 ntBASIC18.4■□□□□ 0.54
PTPN4P29074 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.4■□□□□ 0.54
PTPN4P29074 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.4■□□□□ 0.54
PTPN4P29074 AL445228.2-201ENST00000605589 952 ntBASIC18.4■□□□□ 0.54
PTPN4P29074 DGCR10-201ENST00000609839 495 ntBASIC18.4■□□□□ 0.54
PTPN4P29074 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTPN4P29074 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
PTPN4P29074 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
PTPN4P29074 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
PTPN4P29074 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTPN4P29074 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
PTPN4P29074 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
PTPN4P29074 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 AC141586.5-201ENST00000624546 2050 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
PTPN4P29074 AC004980.1-204ENST00000429707 299 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 AL137013.1-201ENST00000432946 1228 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 B3GAT3P1-201ENST00000471720 806 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN4P29074 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN4P29074 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN4P29074 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.39■□□□□ 0.53
PTPN4P29074 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN4P29074 AL590326.2-201ENST00000625139 305 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
PTPN4P29074 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN4P29074 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.39■□□□□ 0.53
PTPN4P29074 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 TNRC18P3-201ENST00000441896 2691 ntBASIC18.39■□□□□ 0.53
PTPN4P29074 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.39■□□□□ 0.53
PTPN4P29074 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PTPN4P29074 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN4P29074 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.38■□□□□ 0.53
PTPN4P29074 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
PTPN4P29074 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.38■□□□□ 0.53
PTPN4P29074 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 C2orf69P3-201ENST00000565542 1120 ntBASIC18.38■□□□□ 0.53
PTPN4P29074 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
PTPN4P29074 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.38■□□□□ 0.53
PTPN4P29074 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTPN4P29074 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms