Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.87■□□□□ 0.45
PCNAP12004 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.87■□□□□ 0.45
PCNAP12004 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PCNAP12004 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.87■□□□□ 0.45
PCNAP12004 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.87■□□□□ 0.45
PCNAP12004 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
PCNAP12004 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCNAP12004 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
PCNAP12004 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.86■□□□□ 0.45
PCNAP12004 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.86■□□□□ 0.45
PCNAP12004 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PCNAP12004 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
PCNAP12004 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.86■□□□□ 0.45
PCNAP12004 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
PCNAP12004 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.86■□□□□ 0.45
PCNAP12004 BX088651.1-201ENST00000540551 451 ntBASIC17.86■□□□□ 0.45
PCNAP12004 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.86■□□□□ 0.45
PCNAP12004 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PCNAP12004 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.86■□□□□ 0.45
PCNAP12004 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
PCNAP12004 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PCNAP12004 KRT8P9-201ENST00000558927 1449 ntBASIC17.86■□□□□ 0.45
PCNAP12004 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.86■□□□□ 0.45
PCNAP12004 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.86■□□□□ 0.45
PCNAP12004 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.86■□□□□ 0.45
PCNAP12004 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.86■□□□□ 0.45
PCNAP12004 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCNAP12004 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PCNAP12004 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 MMP23A-201ENST00000234610 1017 ntBASIC17.85■□□□□ 0.45
PCNAP12004 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.85■□□□□ 0.45
PCNAP12004 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
PCNAP12004 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.85■□□□□ 0.45
PCNAP12004 CYP2D8P-201ENST00000433633 1490 ntBASIC17.85■□□□□ 0.45
PCNAP12004 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.85■□□□□ 0.45
PCNAP12004 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 MYLKP1-201ENST00000509077 1580 ntBASIC17.85■□□□□ 0.45
PCNAP12004 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.85■□□□□ 0.45
PCNAP12004 NAPSB-206ENST00000562112 1266 ntBASIC17.85■□□□□ 0.45
PCNAP12004 AC092338.2-201ENST00000568827 1415 ntBASIC17.85■□□□□ 0.45
PCNAP12004 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.85■□□□□ 0.45
PCNAP12004 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.85■□□□□ 0.45
PCNAP12004 AC034236.2-201ENST00000606662 1610 ntBASIC17.85■□□□□ 0.45
PCNAP12004 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PCNAP12004 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCNAP12004 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.84■□□□□ 0.45
PCNAP12004 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.84■□□□□ 0.45
PCNAP12004 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.84■□□□□ 0.45
PCNAP12004 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.84■□□□□ 0.45
PCNAP12004 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.84■□□□□ 0.45
PCNAP12004 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 AC007663.1-201ENST00000438948 1240 ntBASIC17.84■□□□□ 0.45
PCNAP12004 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.84■□□□□ 0.45
PCNAP12004 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCNAP12004 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms