Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
PDGFAP04085 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.12■□□□□ 0.33
PDGFAP04085 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PDGFAP04085 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
PDGFAP04085 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.11■□□□□ 0.33
PDGFAP04085 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.11■□□□□ 0.33
PDGFAP04085 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
PDGFAP04085 KRT18P23-201ENST00000435622 1283 ntBASIC17.11■□□□□ 0.33
PDGFAP04085 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
PDGFAP04085 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 AC106795.1-205ENST00000512851 1056 ntBASIC17.11■□□□□ 0.33
PDGFAP04085 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.11■□□□□ 0.33
PDGFAP04085 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PDGFAP04085 AC010240.3-201ENST00000607688 395 ntBASIC17.11■□□□□ 0.33
PDGFAP04085 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.11■□□□□ 0.33
PDGFAP04085 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
PDGFAP04085 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 LINC00167-201ENST00000530583 1419 ntBASIC17.11■□□□□ 0.33
PDGFAP04085 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.11■□□□□ 0.33
PDGFAP04085 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
PDGFAP04085 AC106820.2-201ENST00000563775 3264 ntBASIC17.11■□□□□ 0.33
PDGFAP04085 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
PDGFAP04085 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDGFAP04085 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.11■□□□□ 0.33
PDGFAP04085 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.1■□□□□ 0.33
PDGFAP04085 KRT16P4-201ENST00000453883 522 ntBASIC17.1■□□□□ 0.33
PDGFAP04085 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.1■□□□□ 0.33
PDGFAP04085 AC104819.1-201ENST00000504587 486 ntBASIC17.1■□□□□ 0.33
PDGFAP04085 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.1■□□□□ 0.33
PDGFAP04085 AC074051.2-201ENST00000565115 352 ntBASIC17.1■□□□□ 0.33
PDGFAP04085 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 RCC2P3-201ENST00000418112 1537 ntBASIC17.1■□□□□ 0.33
PDGFAP04085 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PDGFAP04085 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.1■□□□□ 0.33
PDGFAP04085 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDGFAP04085 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFAP04085 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PDGFAP04085 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.09■□□□□ 0.33
PDGFAP04085 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.09■□□□□ 0.33
PDGFAP04085 LINC01711-201ENST00000598340 967 ntBASIC17.09■□□□□ 0.33
PDGFAP04085 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.09■□□□□ 0.33
PDGFAP04085 AL390719.2-201ENST00000606993 987 ntBASIC17.09■□□□□ 0.33
PDGFAP04085 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.09■□□□□ 0.33
PDGFAP04085 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.09■□□□□ 0.33
PDGFAP04085 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDGFAP04085 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms