Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.28■□□□□ 0.68
RTN3O95197 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RTN3O95197 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.28■□□□□ 0.68
RTN3O95197 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RTN3O95197 ANO7L1-203ENST00000602586 1720 ntBASIC19.28■□□□□ 0.68
RTN3O95197 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTN3O95197 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.27■□□□□ 0.68
RTN3O95197 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
RTN3O95197 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 TSSC2-201ENST00000450217 709 ntBASIC19.27■□□□□ 0.68
RTN3O95197 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.27■□□□□ 0.68
RTN3O95197 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.27■□□□□ 0.68
RTN3O95197 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
RTN3O95197 RNF126P1-202ENST00000569893 925 ntBASIC19.27■□□□□ 0.68
RTN3O95197 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
RTN3O95197 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.27■□□□□ 0.68
RTN3O95197 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTN3O95197 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RTN3O95197 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RTN3O95197 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.67
RTN3O95197 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RTN3O95197 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
RTN3O95197 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.27■□□□□ 0.67
RTN3O95197 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.26■□□□□ 0.67
RTN3O95197 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RTN3O95197 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.26■□□□□ 0.67
RTN3O95197 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 AC016734.2-201ENST00000624325 1377 ntBASIC19.26■□□□□ 0.67
RTN3O95197 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
RTN3O95197 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RTN3O95197 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTN3O95197 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RTN3O95197 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.25■□□□□ 0.67
RTN3O95197 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
RTN3O95197 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.25■□□□□ 0.67
RTN3O95197 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
RTN3O95197 HCG4P8-203ENST00000443049 980 ntBASIC19.25■□□□□ 0.67
RTN3O95197 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.25■□□□□ 0.67
RTN3O95197 AC005332.3-201ENST00000589904 676 ntBASIC19.25■□□□□ 0.67
RTN3O95197 GPR32P1-201ENST00000601788 811 ntBASIC19.25■□□□□ 0.67
RTN3O95197 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RTN3O95197 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.25■□□□□ 0.67
RTN3O95197 Z83836.1-201ENST00000624605 1642 ntBASIC19.25■□□□□ 0.67
RTN3O95197 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RTN3O95197 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTN3O95197 AL499627.1-201ENST00000569373 2188 ntBASIC19.25■□□□□ 0.67
RTN3O95197 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RTN3O95197 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RTN3O95197 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.24■□□□□ 0.67
RTN3O95197 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RTN3O95197 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RTN3O95197 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms