Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 KRT18P41-201ENST00000518924 1277 ntBASIC18.35■□□□□ 0.53
SHOX2O60902 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SHOX2O60902 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.35■□□□□ 0.53
SHOX2O60902 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
SHOX2O60902 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 AC011767.1-201ENST00000617410 1153 ntBASIC18.35■□□□□ 0.53
SHOX2O60902 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SHOX2O60902 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SHOX2O60902 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.34■□□□□ 0.53
SHOX2O60902 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.34■□□□□ 0.53
SHOX2O60902 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SHOX2O60902 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHOX2O60902 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.34■□□□□ 0.53
SHOX2O60902 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.34■□□□□ 0.53
SHOX2O60902 LINC00554-201ENST00000564841 3011 ntBASIC18.33■□□□□ 0.53
SHOX2O60902 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SHOX2O60902 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHOX2O60902 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.33■□□□□ 0.53
SHOX2O60902 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHOX2O60902 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHOX2O60902 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SHOX2O60902 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHOX2O60902 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SHOX2O60902 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHOX2O60902 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHOX2O60902 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.33■□□□□ 0.52
SHOX2O60902 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.33■□□□□ 0.52
SHOX2O60902 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.33■□□□□ 0.52
SHOX2O60902 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.33■□□□□ 0.52
SHOX2O60902 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHOX2O60902 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHOX2O60902 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.33■□□□□ 0.52
SHOX2O60902 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SHOX2O60902 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHOX2O60902 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
SHOX2O60902 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.32■□□□□ 0.52
SHOX2O60902 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
SHOX2O60902 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SHOX2O60902 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHOX2O60902 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.32■□□□□ 0.52
SHOX2O60902 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 TUBB8P6-201ENST00000436895 1288 ntBASIC18.32■□□□□ 0.52
SHOX2O60902 CNN2P6-201ENST00000439038 900 ntBASIC18.32■□□□□ 0.52
SHOX2O60902 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.32■□□□□ 0.52
SHOX2O60902 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.32■□□□□ 0.52
SHOX2O60902 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.32■□□□□ 0.52
SHOX2O60902 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.32■□□□□ 0.52
SHOX2O60902 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
SHOX2O60902 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHOX2O60902 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SHOX2O60902 AC068338.2-201ENST00000563278 1430 ntBASIC18.32■□□□□ 0.52
SHOX2O60902 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOX2O60902 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms