Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.21■□□□□ 0.19
SGCEO43556 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SGCEO43556 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.21■□□□□ 0.19
SGCEO43556 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SGCEO43556 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
SGCEO43556 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SGCEO43556 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SGCEO43556 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.21■□□□□ 0.19
SGCEO43556 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SGCEO43556 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.21■□□□□ 0.18
SGCEO43556 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
SGCEO43556 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.21■□□□□ 0.18
SGCEO43556 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SGCEO43556 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.21■□□□□ 0.18
SGCEO43556 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.2■□□□□ 0.18
SGCEO43556 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SGCEO43556 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.2■□□□□ 0.18
SGCEO43556 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SGCEO43556 INGX-201ENST00000359239 846 ntBASIC16.2■□□□□ 0.18
SGCEO43556 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.2■□□□□ 0.18
SGCEO43556 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.2■□□□□ 0.18
SGCEO43556 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.2■□□□□ 0.18
SGCEO43556 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SGCEO43556 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SGCEO43556 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.2■□□□□ 0.18
SGCEO43556 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SGCEO43556 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.19■□□□□ 0.18
SGCEO43556 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
SGCEO43556 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.19■□□□□ 0.18
SGCEO43556 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 KRT18P23-201ENST00000435622 1283 ntBASIC16.19■□□□□ 0.18
SGCEO43556 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.19■□□□□ 0.18
SGCEO43556 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.19■□□□□ 0.18
SGCEO43556 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SGCEO43556 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.19■□□□□ 0.18
SGCEO43556 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
SGCEO43556 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
SGCEO43556 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 KRT8P7-201ENST00000533003 1432 ntBASIC16.19■□□□□ 0.18
SGCEO43556 KRT8P50-201ENST00000562022 1438 ntBASIC16.19■□□□□ 0.18
SGCEO43556 HOXB1-202ENST00000577092 1414 ntBASIC16.19■□□□□ 0.18
SGCEO43556 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SGCEO43556 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SGCEO43556 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.18■□□□□ 0.18
SGCEO43556 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SGCEO43556 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.18■□□□□ 0.18
SGCEO43556 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms