Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 KRT89P-201ENST00000620027 1478 ntBASIC21.2■□□□□ 0.98
CTDP1Q9Y5B0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 MIR149-201ENST00000384879 89 ntBASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 AC008687.5-201ENST00000593746 558 ntBASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 AL592071.1-201ENST00000611956 408 ntBASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 LINC00167-201ENST00000530583 1419 ntBASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDP1Q9Y5B0 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTDP1Q9Y5B0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AC138894.3-201ENST00000603787 634 ntBASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 IFNL4P1-201ENST00000607083 540 ntBASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AC233702.3-201ENST00000578656 1387 ntBASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AC009102.3-201ENST00000623118 1491 ntBASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDP1Q9Y5B0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 AC112777.1-201ENST00000540175 1423 ntBASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 AC011840.4-201ENST00000578471 627 ntBASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 AC099336.1-202ENST00000602961 463 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms