Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 AP000525.1-201ENST00000608286 694 ntBASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 CR769767.2-201ENST00000622735 460 ntBASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 MIR149-201ENST00000384879 89 ntBASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 BX088651.1-201ENST00000540551 451 ntBASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 AP006294.2-201ENST00000641667 209 ntBASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 AC008764.6-201ENST00000595909 2069 ntBASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HIF3AQ9Y2N7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 OR6D1P-202ENST00000641007 5290 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AC009102.3-201ENST00000623118 1491 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 KRT17P2-201ENST00000300992 1314 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 KRT18P23-201ENST00000435622 1283 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AC116562.4-202ENST00000641738 218 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 SDHAP2-201ENST00000455183 2001 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AC138028.4-201ENST00000564984 1845 ntBASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HIF3AQ9Y2N7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HIF3AQ9Y2N7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms