Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 AC073912.3-201ENST00000624414 853 ntBASIC14.86□□□□□ -0.03
FOXA2Q9Y261 AC138028.4-201ENST00000564984 1845 ntBASIC14.86□□□□□ -0.03
FOXA2Q9Y261 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA2Q9Y261 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.85□□□□□ -0.03
FOXA2Q9Y261 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 AC116562.4-202ENST00000641738 218 ntBASIC14.85□□□□□ -0.03
FOXA2Q9Y261 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 ESPNP-201ENST00000270691 2015 ntBASIC14.85□□□□□ -0.03
FOXA2Q9Y261 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
FOXA2Q9Y261 AC067852.2-201ENST00000590513 2313 ntBASIC14.84□□□□□ -0.03
FOXA2Q9Y261 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 MIR564-202ENST00000385049 94 ntBASIC14.84□□□□□ -0.03
FOXA2Q9Y261 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 EGLN1P1-201ENST00000531623 762 ntBASIC14.84□□□□□ -0.03
FOXA2Q9Y261 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 GNAS-203ENST00000306120 1878 ntBASIC14.84□□□□□ -0.03
FOXA2Q9Y261 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FOXA2Q9Y261 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms