Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 AC145285.6-201ENST00000604632 637 ntBASIC19.68■□□□□ 0.74
SIX2Q9NPC8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 AL138966.2-201ENST00000621997 464 ntBASIC19.68■□□□□ 0.74
SIX2Q9NPC8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.68■□□□□ 0.74
SIX2Q9NPC8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX2Q9NPC8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 AC009065.1-201ENST00000564055 1225 ntBASIC19.67■□□□□ 0.74
SIX2Q9NPC8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 MIR3917-201ENST00000580971 93 ntBASIC19.67■□□□□ 0.74
SIX2Q9NPC8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 AC134043.2-201ENST00000624206 2238 ntBASIC19.67■□□□□ 0.74
SIX2Q9NPC8 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.67■□□□□ 0.74
SIX2Q9NPC8 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 KRT18P22-201ENST00000402024 1347 ntBASIC19.66■□□□□ 0.74
SIX2Q9NPC8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms