Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21■□□□□ 0.95
USP28Q96RU2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.99■□□□□ 0.95
USP28Q96RU2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 MIR718-201ENST00000390190 70 ntBASIC20.99■□□□□ 0.95
USP28Q96RU2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
USP28Q96RU2 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.99■□□□□ 0.95
USP28Q96RU2 MIR1238-201ENST00000408483 83 ntBASIC20.99■□□□□ 0.95
USP28Q96RU2 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 AC007663.1-201ENST00000438948 1240 ntBASIC20.99■□□□□ 0.95
USP28Q96RU2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.99■□□□□ 0.95
USP28Q96RU2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
USP28Q96RU2 LINC01126-201ENST00000623515 1646 ntBASIC20.99■□□□□ 0.95
USP28Q96RU2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.99■□□□□ 0.95
USP28Q96RU2 LINC00896-202ENST00000609602 2128 ntBASIC20.99■□□□□ 0.95
USP28Q96RU2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.99■□□□□ 0.95
USP28Q96RU2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP28Q96RU2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.99■□□□□ 0.95
USP28Q96RU2 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USP28Q96RU2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
USP28Q96RU2 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.98■□□□□ 0.95
USP28Q96RU2 INGX-201ENST00000359239 846 ntBASIC20.98■□□□□ 0.95
USP28Q96RU2 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.98■□□□□ 0.95
USP28Q96RU2 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.98■□□□□ 0.95
USP28Q96RU2 TSPY15P-201ENST00000457163 923 ntBASIC20.98■□□□□ 0.95
USP28Q96RU2 SNORA78-201ENST00000459373 127 ntBASIC20.98■□□□□ 0.95
USP28Q96RU2 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.98■□□□□ 0.95
USP28Q96RU2 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.98■□□□□ 0.95
USP28Q96RU2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP28Q96RU2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
USP28Q96RU2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
USP28Q96RU2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.97■□□□□ 0.95
USP28Q96RU2 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
USP28Q96RU2 GNAS-203ENST00000306120 1878 ntBASIC20.97■□□□□ 0.95
USP28Q96RU2 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.97■□□□□ 0.95
USP28Q96RU2 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 TMEM191A-211ENST00000637163 1067 ntBASIC20.97■□□□□ 0.95
USP28Q96RU2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.97■□□□□ 0.95
USP28Q96RU2 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP28Q96RU2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
USP28Q96RU2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.96■□□□□ 0.95
USP28Q96RU2 KRT8P7-201ENST00000533003 1432 ntBASIC20.96■□□□□ 0.95
USP28Q96RU2 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP28Q96RU2 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.96■□□□□ 0.95
USP28Q96RU2 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
USP28Q96RU2 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 CCR12P-201ENST00000446203 998 ntBASIC20.96■□□□□ 0.95
USP28Q96RU2 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.96■□□□□ 0.95
USP28Q96RU2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.96■□□□□ 0.95
USP28Q96RU2 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
USP28Q96RU2 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
USP28Q96RU2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.96■□□□□ 0.95
USP28Q96RU2 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP28Q96RU2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP28Q96RU2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.96■□□□□ 0.95
USP28Q96RU2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms