Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 STARP1-201ENST00000397973 869 ntBASIC18.82■□□□□ 0.6
SKA1Q96BD8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 AL136038.3-201ENST00000561909 1096 ntBASIC18.82■□□□□ 0.6
SKA1Q96BD8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 AC069148.1-201ENST00000608741 768 ntBASIC18.82■□□□□ 0.6
SKA1Q96BD8 AC093458.2-201ENST00000623150 629 ntBASIC18.82■□□□□ 0.6
SKA1Q96BD8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SKA1Q96BD8 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SKA1Q96BD8 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 ABALON-201ENST00000629058 1903 ntBASIC18.81■□□□□ 0.6
SKA1Q96BD8 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 TSPY21P-201ENST00000433481 731 ntBASIC18.81■□□□□ 0.6
SKA1Q96BD8 KRT18P48-201ENST00000434763 852 ntBASIC18.81■□□□□ 0.6
SKA1Q96BD8 AC112907.2-201ENST00000448639 330 ntBASIC18.81■□□□□ 0.6
SKA1Q96BD8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.81■□□□□ 0.6
SKA1Q96BD8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SKA1Q96BD8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SKA1Q96BD8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SKA1Q96BD8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.8■□□□□ 0.6
SKA1Q96BD8 AC005332.1-201ENST00000577698 1310 ntBASIC18.8■□□□□ 0.6
SKA1Q96BD8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SKA1Q96BD8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.8■□□□□ 0.6
SKA1Q96BD8 AC034232.1-201ENST00000506026 1064 ntBASIC18.8■□□□□ 0.6
SKA1Q96BD8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 ZNF444P1-201ENST00000559497 298 ntBASIC18.8■□□□□ 0.6
SKA1Q96BD8 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 AC116407.4-201ENST00000623319 1061 ntBASIC18.8■□□□□ 0.6
SKA1Q96BD8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.8■□□□□ 0.6
SKA1Q96BD8 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKA1Q96BD8 HCG11-201ENST00000411553 5696 ntBASIC18.8■□□□□ 0.6
SKA1Q96BD8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 AC104417.2-201ENST00000562989 1793 ntBASIC18.79■□□□□ 0.6
SKA1Q96BD8 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 KRT126P-201ENST00000549467 1181 ntBASIC18.79■□□□□ 0.6
SKA1Q96BD8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms