Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 LINC01126-201ENST00000623515 1646 ntBASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SHROOM3Q8TF72 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 RASA4DP-201ENST00000460726 1199 ntBASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 AC034232.1-201ENST00000506026 1064 ntBASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 AL391807.1-203ENST00000604392 2365 ntBASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 ABALON-201ENST00000629058 1903 ntBASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 PVRIG2P-201ENST00000435460 978 ntBASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHROOM3Q8TF72 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 KRT18P38-201ENST00000449496 1282 ntBASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.69■□□□□ 0.58
SHROOM3Q8TF72 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 PHGDH-209ENST00000641074 1780 ntBASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 AC009102.3-201ENST00000623118 1491 ntBASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.68■□□□□ 0.58
SHROOM3Q8TF72 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 AC139887.4-201ENST00000607877 719 ntBASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHROOM3Q8TF72 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms