Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SH3RF1Q7Z6J0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SH3RF1Q7Z6J0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SH3RF1Q7Z6J0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 AL357033.4-201ENST00000617703 1807 ntBASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 AC007613.1-201ENST00000572811 2597 ntBASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 AC120498.9-201ENST00000339021 3867 ntBASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 AC034232.1-201ENST00000506026 1064 ntBASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 AC024243.1-201ENST00000609234 778 ntBASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
SH3RF1Q7Z6J0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 KRT8P26-201ENST00000534154 1276 ntBASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
SH3RF1Q7Z6J0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 AL162741.1-201ENST00000565563 1558 ntBASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms