Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PCDH1Q08174 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 AC087499.1-201ENST00000418141 1075 ntBASIC17.7■□□□□ 0.42
PCDH1Q08174 ECEL1P3-201ENST00000427961 737 ntBASIC17.7■□□□□ 0.42
PCDH1Q08174 AC010240.3-201ENST00000607688 395 ntBASIC17.7■□□□□ 0.42
PCDH1Q08174 AC012306.2-201ENST00000609350 630 ntBASIC17.7■□□□□ 0.42
PCDH1Q08174 AL138966.2-201ENST00000621997 464 ntBASIC17.7■□□□□ 0.42
PCDH1Q08174 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH1Q08174 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH1Q08174 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH1Q08174 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PCDH1Q08174 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
PCDH1Q08174 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDH1Q08174 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDH1Q08174 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDH1Q08174 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.69■□□□□ 0.42
PCDH1Q08174 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 AC009947.2-201ENST00000444014 672 ntBASIC17.69■□□□□ 0.42
PCDH1Q08174 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.69■□□□□ 0.42
PCDH1Q08174 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDH1Q08174 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
PCDH1Q08174 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDH1Q08174 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH1Q08174 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDH1Q08174 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PCDH1Q08174 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDH1Q08174 AP000523.1-201ENST00000398242 1049 ntBASIC17.68■□□□□ 0.42
PCDH1Q08174 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDH1Q08174 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH1Q08174 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 PHGDH-209ENST00000641074 1780 ntBASIC17.68■□□□□ 0.42
PCDH1Q08174 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PCDH1Q08174 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH1Q08174 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
PCDH1Q08174 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PCDH1Q08174 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH1Q08174 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms