Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNA1P78396 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.84■□□□□ 0.93
CCNA1P78396 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.84■□□□□ 0.93
CCNA1P78396 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCNA1P78396 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.83■□□□□ 0.93
CCNA1P78396 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CCNA1P78396 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.83■□□□□ 0.93
CCNA1P78396 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CCNA1P78396 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNA1P78396 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNA1P78396 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.83■□□□□ 0.93
CCNA1P78396 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNA1P78396 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.83■□□□□ 0.93
CCNA1P78396 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.83■□□□□ 0.93
CCNA1P78396 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.83■□□□□ 0.93
CCNA1P78396 FAM215A-202ENST00000632077 792 ntBASIC20.83■□□□□ 0.93
CCNA1P78396 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCNA1P78396 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCNA1P78396 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCNA1P78396 MYLKP1-201ENST00000509077 1580 ntBASIC20.83■□□□□ 0.92
CCNA1P78396 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CCNA1P78396 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.83■□□□□ 0.92
CCNA1P78396 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CCNA1P78396 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CCNA1P78396 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CCNA1P78396 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CCNA1P78396 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCNA1P78396 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNA1P78396 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNA1P78396 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.82■□□□□ 0.92
CCNA1P78396 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCNA1P78396 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.82■□□□□ 0.92
CCNA1P78396 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 MTCL1P1-201ENST00000446207 792 ntBASIC20.82■□□□□ 0.92
CCNA1P78396 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.82■□□□□ 0.92
CCNA1P78396 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.82■□□□□ 0.92
CCNA1P78396 RPL13AP23-201ENST00000480739 586 ntBASIC20.82■□□□□ 0.92
CCNA1P78396 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNA1P78396 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.82■□□□□ 0.92
CCNA1P78396 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.82■□□□□ 0.92
CCNA1P78396 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
CCNA1P78396 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 ZNF259P1-201ENST00000407656 1365 ntBASIC20.82■□□□□ 0.92
CCNA1P78396 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCNA1P78396 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.82■□□□□ 0.92
CCNA1P78396 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 PMS2P7-201ENST00000506558 1336 ntBASIC20.81■□□□□ 0.92
CCNA1P78396 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.81■□□□□ 0.92
CCNA1P78396 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
CCNA1P78396 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.81■□□□□ 0.92
CCNA1P78396 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.81■□□□□ 0.92
CCNA1P78396 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.81■□□□□ 0.92
CCNA1P78396 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.81■□□□□ 0.92
CCNA1P78396 TERC-201ENST00000602385 541 ntBASIC20.81■□□□□ 0.92
CCNA1P78396 AL138831.2-201ENST00000606564 490 ntBASIC20.81■□□□□ 0.92
CCNA1P78396 MIR7706-201ENST00000613747 67 ntBASIC20.81■□□□□ 0.92
CCNA1P78396 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCNA1P78396 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.81■□□□□ 0.92
CCNA1P78396 SDHAP2-201ENST00000455183 2001 ntBASIC20.81■□□□□ 0.92
CCNA1P78396 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.81■□□□□ 0.92
CCNA1P78396 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 AL024508.2-201ENST00000607749 1894 ntBASIC20.81■□□□□ 0.92
CCNA1P78396 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.81■□□□□ 0.92
CCNA1P78396 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCNA1P78396 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
CCNA1P78396 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 AC093484.2-201ENST00000580996 2166 ntBASIC20.8■□□□□ 0.92
CCNA1P78396 INTS4P1-201ENST00000438455 1935 ntBASIC20.8■□□□□ 0.92
CCNA1P78396 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms