Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
HLA-DOAP06340 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HLA-DOAP06340 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AC091607.1-201ENST00000490318 1060 ntBASIC21.59■■□□□ 1.05
HLA-DOAP06340 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HLA-DOAP06340 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
HLA-DOAP06340 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HLA-DOAP06340 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.58■■□□□ 1.05
HLA-DOAP06340 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
HLA-DOAP06340 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.58■■□□□ 1.04
HLA-DOAP06340 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.58■■□□□ 1.04
HLA-DOAP06340 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
HLA-DOAP06340 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.58■■□□□ 1.04
HLA-DOAP06340 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 AL353801.3-201ENST00000609898 542 ntBASIC21.57■■□□□ 1.04
HLA-DOAP06340 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 ANO7L1-203ENST00000602586 1720 ntBASIC21.57■■□□□ 1.04
HLA-DOAP06340 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
HLA-DOAP06340 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
HLA-DOAP06340 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 NUS1P2-201ENST00000417358 873 ntBASIC21.56■■□□□ 1.04
HLA-DOAP06340 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms