Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.37■□□□□ 0.05
ABCA1O95477 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
ABCA1O95477 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 AF238378.1-201ENST00000526806 358 ntBASIC15.36■□□□□ 0.05
ABCA1O95477 SLC25A1P1-201ENST00000528351 927 ntBASIC15.36■□□□□ 0.05
ABCA1O95477 AC064862.7-201ENST00000604520 867 ntBASIC15.36■□□□□ 0.05
ABCA1O95477 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.36■□□□□ 0.05
ABCA1O95477 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.36■□□□□ 0.05
ABCA1O95477 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
ABCA1O95477 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.36■□□□□ 0.05
ABCA1O95477 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.36■□□□□ 0.05
ABCA1O95477 AC079776.4-201ENST00000511039 504 ntBASIC15.36■□□□□ 0.05
ABCA1O95477 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.36■□□□□ 0.05
ABCA1O95477 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 TP73-AS1-207ENST00000624167 988 ntBASIC15.36■□□□□ 0.05
ABCA1O95477 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
ABCA1O95477 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.36■□□□□ 0.05
ABCA1O95477 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA1O95477 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.35■□□□□ 0.05
ABCA1O95477 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA1O95477 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.35■□□□□ 0.05
ABCA1O95477 IGHV3-47-201ENST00000425060 335 ntBASIC15.35■□□□□ 0.05
ABCA1O95477 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.35■□□□□ 0.05
ABCA1O95477 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.35■□□□□ 0.05
ABCA1O95477 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.35■□□□□ 0.05
ABCA1O95477 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.35■□□□□ 0.05
ABCA1O95477 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
ABCA1O95477 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.35■□□□□ 0.05
ABCA1O95477 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
ABCA1O95477 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA1O95477 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.34■□□□□ 0.05
ABCA1O95477 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.34■□□□□ 0.05
ABCA1O95477 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA1O95477 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
ABCA1O95477 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA1O95477 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
ABCA1O95477 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.34■□□□□ 0.05
ABCA1O95477 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.34■□□□□ 0.05
ABCA1O95477 AC090616.6-201ENST00000582640 721 ntBASIC15.34■□□□□ 0.05
ABCA1O95477 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
ABCA1O95477 AL390719.2-201ENST00000606993 987 ntBASIC15.34■□□□□ 0.05
ABCA1O95477 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.34■□□□□ 0.05
ABCA1O95477 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms