Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS4BO75351 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS4BO75351 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.02■□□□□ 0.47
VPS4BO75351 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.02■□□□□ 0.47
VPS4BO75351 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS4BO75351 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS4BO75351 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
VPS4BO75351 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.02■□□□□ 0.47
VPS4BO75351 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
VPS4BO75351 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS4BO75351 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
VPS4BO75351 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VPS4BO75351 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS4BO75351 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS4BO75351 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
VPS4BO75351 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS4BO75351 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS4BO75351 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VPS4BO75351 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
VPS4BO75351 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS4BO75351 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.01■□□□□ 0.47
VPS4BO75351 AC135776.1-201ENST00000319817 2481 ntBASIC18■□□□□ 0.47
VPS4BO75351 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18■□□□□ 0.47
VPS4BO75351 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 NIFKP9-201ENST00000419265 221 ntBASIC18■□□□□ 0.47
VPS4BO75351 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 TPM4P1-201ENST00000436100 807 ntBASIC18■□□□□ 0.47
VPS4BO75351 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18■□□□□ 0.47
VPS4BO75351 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18■□□□□ 0.47
VPS4BO75351 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18■□□□□ 0.47
VPS4BO75351 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18■□□□□ 0.47
VPS4BO75351 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18■□□□□ 0.47
VPS4BO75351 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18■□□□□ 0.47
VPS4BO75351 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18■□□□□ 0.47
VPS4BO75351 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS4BO75351 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS4BO75351 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS4BO75351 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VPS4BO75351 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.99■□□□□ 0.47
VPS4BO75351 AK4P3-201ENST00000418260 669 ntBASIC17.99■□□□□ 0.47
VPS4BO75351 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms