Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.89■□□□□ 0.45
HDAC3O15379 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HDAC3O15379 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
HDAC3O15379 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
HDAC3O15379 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HDAC3O15379 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.88■□□□□ 0.45
HDAC3O15379 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
HDAC3O15379 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HDAC3O15379 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.88■□□□□ 0.45
HDAC3O15379 AC008040.2-201ENST00000461049 708 ntBASIC17.88■□□□□ 0.45
HDAC3O15379 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.88■□□□□ 0.45
HDAC3O15379 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.88■□□□□ 0.45
HDAC3O15379 AC026271.3-201ENST00000571884 352 ntBASIC17.88■□□□□ 0.45
HDAC3O15379 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HDAC3O15379 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HDAC3O15379 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
HDAC3O15379 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC3O15379 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC3O15379 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.88■□□□□ 0.45
HDAC3O15379 AC006116.8-202ENST00000587620 1550 ntBASIC17.87■□□□□ 0.45
HDAC3O15379 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
HDAC3O15379 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HDAC3O15379 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC3O15379 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.87■□□□□ 0.45
HDAC3O15379 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.87■□□□□ 0.45
HDAC3O15379 KRT16P1-201ENST00000399124 1418 ntBASIC17.87■□□□□ 0.45
HDAC3O15379 KRT8P50-201ENST00000562022 1438 ntBASIC17.87■□□□□ 0.45
HDAC3O15379 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HDAC3O15379 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 AC034236.2-201ENST00000606662 1610 ntBASIC17.87■□□□□ 0.45
HDAC3O15379 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC3O15379 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HDAC3O15379 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HDAC3O15379 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.86■□□□□ 0.45
HDAC3O15379 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC3O15379 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC3O15379 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 AC009053.2-201ENST00000563701 2365 ntBASIC17.86■□□□□ 0.45
HDAC3O15379 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
HDAC3O15379 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
HDAC3O15379 FAM207BP-201ENST00000447172 505 ntBASIC17.86■□□□□ 0.45
HDAC3O15379 AC008622.2-201ENST00000617006 1229 ntBASIC17.86■□□□□ 0.45
HDAC3O15379 AC130371.2-201ENST00000619443 611 ntBASIC17.86■□□□□ 0.45
HDAC3O15379 AL031985.4-201ENST00000642138 673 ntBASIC17.86■□□□□ 0.45
HDAC3O15379 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.86■□□□□ 0.45
HDAC3O15379 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.86■□□□□ 0.45
HDAC3O15379 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HDAC3O15379 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC3O15379 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HDAC3O15379 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
HDAC3O15379 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC3O15379 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC3O15379 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC3O15379 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC3O15379 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC3O15379 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC3O15379 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms