Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MIR3180-4-201ENST00000582223 153 ntBASIC19.66■□□□□ 0.74
FOXN3O00409 AC010240.3-201ENST00000607688 395 ntBASIC19.66■□□□□ 0.74
FOXN3O00409 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXN3O00409 AC138028.4-201ENST00000564984 1845 ntBASIC19.66■□□□□ 0.74
FOXN3O00409 KRT18P22-201ENST00000402024 1347 ntBASIC19.66■□□□□ 0.74
FOXN3O00409 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
FOXN3O00409 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.66■□□□□ 0.74
FOXN3O00409 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXN3O00409 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXN3O00409 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 AC008764.6-201ENST00000595909 2069 ntBASIC19.65■□□□□ 0.74
FOXN3O00409 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
FOXN3O00409 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.65■□□□□ 0.74
FOXN3O00409 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXN3O00409 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.65■□□□□ 0.74
FOXN3O00409 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.65■□□□□ 0.74
FOXN3O00409 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
FOXN3O00409 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
FOXN3O00409 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
FOXN3O00409 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
FOXN3O00409 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
FOXN3O00409 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
FOXN3O00409 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.64■□□□□ 0.74
FOXN3O00409 AC067852.2-201ENST00000590513 2313 ntBASIC19.64■□□□□ 0.74
FOXN3O00409 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
FOXN3O00409 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
FOXN3O00409 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.73
FOXN3O00409 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.64■□□□□ 0.73
FOXN3O00409 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.64■□□□□ 0.73
FOXN3O00409 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.64■□□□□ 0.73
FOXN3O00409 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXN3O00409 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXN3O00409 AL512604.3-201ENST00000569583 964 ntBASIC19.64■□□□□ 0.73
FOXN3O00409 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.64■□□□□ 0.73
FOXN3O00409 AC145285.6-201ENST00000604632 637 ntBASIC19.64■□□□□ 0.73
FOXN3O00409 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.64■□□□□ 0.73
FOXN3O00409 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
FOXN3O00409 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXN3O00409 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
FOXN3O00409 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 ECEL1P3-201ENST00000427961 737 ntBASIC19.63■□□□□ 0.73
FOXN3O00409 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
FOXN3O00409 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXN3O00409 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXN3O00409 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms