Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.74■□□□□ 0.59
CBX4O00257 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.74■□□□□ 0.59
CBX4O00257 AL645929.1-201ENST00000420084 975 ntBASIC18.74■□□□□ 0.59
CBX4O00257 TPM4P1-201ENST00000436100 807 ntBASIC18.74■□□□□ 0.59
CBX4O00257 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.74■□□□□ 0.59
CBX4O00257 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.74■□□□□ 0.59
CBX4O00257 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.74■□□□□ 0.59
CBX4O00257 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.74■□□□□ 0.59
CBX4O00257 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.74■□□□□ 0.59
CBX4O00257 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.74■□□□□ 0.59
CBX4O00257 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.74■□□□□ 0.59
CBX4O00257 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CBX4O00257 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CBX4O00257 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.73■□□□□ 0.59
CBX4O00257 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
CBX4O00257 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CBX4O00257 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.73■□□□□ 0.59
CBX4O00257 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.73■□□□□ 0.59
CBX4O00257 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CBX4O00257 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CBX4O00257 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CBX4O00257 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CBX4O00257 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.73■□□□□ 0.59
CBX4O00257 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.72■□□□□ 0.59
CBX4O00257 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.72■□□□□ 0.59
CBX4O00257 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.72■□□□□ 0.59
CBX4O00257 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.72■□□□□ 0.59
CBX4O00257 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.72■□□□□ 0.59
CBX4O00257 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.72■□□□□ 0.59
CBX4O00257 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
CBX4O00257 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.72■□□□□ 0.59
CBX4O00257 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.72■□□□□ 0.59
CBX4O00257 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.72■□□□□ 0.59
CBX4O00257 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CBX4O00257 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.72■□□□□ 0.59
CBX4O00257 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CBX4O00257 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.72■□□□□ 0.59
CBX4O00257 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CBX4O00257 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.72■□□□□ 0.59
CBX4O00257 AL162741.1-201ENST00000565563 1558 ntBASIC18.72■□□□□ 0.59
CBX4O00257 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
CBX4O00257 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.71■□□□□ 0.59
CBX4O00257 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CBX4O00257 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 MIR662-201ENST00000384847 95 ntBASIC18.71■□□□□ 0.59
CBX4O00257 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.71■□□□□ 0.59
CBX4O00257 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CBX4O00257 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 HCG4P8-203ENST00000443049 980 ntBASIC18.71■□□□□ 0.59
CBX4O00257 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.71■□□□□ 0.59
CBX4O00257 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.71■□□□□ 0.59
CBX4O00257 AC116407.4-201ENST00000623319 1061 ntBASIC18.71■□□□□ 0.59
CBX4O00257 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms