Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
LRRC53A6NM62 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.8■□□□□ 0.76
LRRC53A6NM62 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRRC53A6NM62 AC009102.3-201ENST00000623118 1491 ntBASIC19.79■□□□□ 0.76
LRRC53A6NM62 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 AP005242.2-201ENST00000580065 1175 ntBASIC19.79■□□□□ 0.76
LRRC53A6NM62 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.79■□□□□ 0.76
LRRC53A6NM62 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRRC53A6NM62 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
LRRC53A6NM62 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 MIR149-201ENST00000384879 89 ntBASIC19.78■□□□□ 0.76
LRRC53A6NM62 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRRC53A6NM62 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LRRC53A6NM62 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 FZD10-202ENST00000539839 3282 ntBASIC19.77■□□□□ 0.76
LRRC53A6NM62 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 AP003041.3-201ENST00000527151 707 ntBASIC19.77■□□□□ 0.76
LRRC53A6NM62 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 AP003071.4-201ENST00000562276 1284 ntBASIC19.77■□□□□ 0.76
LRRC53A6NM62 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 Z99916.2-201ENST00000604037 246 ntBASIC19.77■□□□□ 0.76
LRRC53A6NM62 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 AL023803.3-201ENST00000615559 522 ntBASIC19.77■□□□□ 0.76
LRRC53A6NM62 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRRC53A6NM62 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.77■□□□□ 0.76
LRRC53A6NM62 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
LRRC53A6NM62 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
LRRC53A6NM62 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LRRC53A6NM62 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LRRC53A6NM62 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
LRRC53A6NM62 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 HOXB1-202ENST00000577092 1414 ntBASIC19.76■□□□□ 0.75
LRRC53A6NM62 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms