Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.63■■□□□ 1.05
DDX4Q9NQI0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 LINC00602-201ENST00000629776 2065 ntBASIC21.62■■□□□ 1.05
DDX4Q9NQI0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 AC114341.1-201ENST00000618070 349 ntBASIC21.62■■□□□ 1.05
DDX4Q9NQI0 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ANO7L1-203ENST00000602586 1720 ntBASIC21.62■■□□□ 1.05
DDX4Q9NQI0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.62■■□□□ 1.05
DDX4Q9NQI0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 RCN1P2-201ENST00000398357 915 ntBASIC21.61■■□□□ 1.05
DDX4Q9NQI0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 RNA5SP419-201ENST00000515908 135 ntBASIC21.61■■□□□ 1.05
DDX4Q9NQI0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 AL591684.3-201ENST00000605187 298 ntBASIC21.61■■□□□ 1.05
DDX4Q9NQI0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 SLC25A24-204ENST00000569674 2357 ntBASIC21.61■■□□□ 1.05
DDX4Q9NQI0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
DDX4Q9NQI0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 AC079776.4-201ENST00000511039 504 ntBASIC21.6■■□□□ 1.05
DDX4Q9NQI0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 AC008687.5-201ENST00000593746 558 ntBASIC21.6■■□□□ 1.05
DDX4Q9NQI0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
DDX4Q9NQI0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms