Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SIX2Q9NPC8 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX2Q9NPC8 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX2Q9NPC8 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 LINC01568-207ENST00000641790 1380 ntBASIC19.72■□□□□ 0.75
SIX2Q9NPC8 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 AC087499.1-201ENST00000418141 1075 ntBASIC19.72■□□□□ 0.75
SIX2Q9NPC8 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.72■□□□□ 0.75
SIX2Q9NPC8 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX2Q9NPC8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 SLC25A6P5-201ENST00000435663 894 ntBASIC19.71■□□□□ 0.75
SIX2Q9NPC8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX2Q9NPC8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 ECEL1P3-201ENST00000427961 737 ntBASIC19.7■□□□□ 0.74
SIX2Q9NPC8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SIX2Q9NPC8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 NEK4P2-201ENST00000580004 1012 ntBASIC19.69■□□□□ 0.74
SIX2Q9NPC8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX2Q9NPC8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms