Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.23■□□□□ 0.19
MMP28Q9H239 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC16.23■□□□□ 0.19
MMP28Q9H239 PNMA6B-201ENST00000538162 1200 ntBASIC16.23■□□□□ 0.19
MMP28Q9H239 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.23■□□□□ 0.19
MMP28Q9H239 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.23■□□□□ 0.19
MMP28Q9H239 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.23■□□□□ 0.19
MMP28Q9H239 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.23■□□□□ 0.19
MMP28Q9H239 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MMP28Q9H239 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.23■□□□□ 0.19
MMP28Q9H239 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC16.22■□□□□ 0.19
MMP28Q9H239 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
MMP28Q9H239 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MMP28Q9H239 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.22■□□□□ 0.19
MMP28Q9H239 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.22■□□□□ 0.19
MMP28Q9H239 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 ITM2C-210ENST00000620962 501 ntBASIC16.22■□□□□ 0.19
MMP28Q9H239 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MMP28Q9H239 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.22■□□□□ 0.19
MMP28Q9H239 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
MMP28Q9H239 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MMP28Q9H239 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.22■□□□□ 0.19
MMP28Q9H239 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.21■□□□□ 0.19
MMP28Q9H239 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.21■□□□□ 0.19
MMP28Q9H239 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 AC138028.4-201ENST00000564984 1845 ntBASIC16.21■□□□□ 0.19
MMP28Q9H239 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.21■□□□□ 0.19
MMP28Q9H239 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
MMP28Q9H239 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MMP28Q9H239 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.21■□□□□ 0.18
MMP28Q9H239 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
MMP28Q9H239 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.21■□□□□ 0.18
MMP28Q9H239 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
MMP28Q9H239 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms