Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
IFT140Q96RY7 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC30.3■■■□□ 2.44
IFT140Q96RY7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 SIGLEC16-201ENST00000599858 1437 ntBASIC30.29■■■□□ 2.44
IFT140Q96RY7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 CD82-202ENST00000342935 967 ntTSL 5 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 AL139400.1-201ENST00000366220 510 ntBASIC30.29■■■□□ 2.44
IFT140Q96RY7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 ELK2BP-201ENST00000415014 1224 ntBASIC30.29■■■□□ 2.44
IFT140Q96RY7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 KRT18P65-201ENST00000439811 1286 ntBASIC30.29■■■□□ 2.44
IFT140Q96RY7 HCG4B-203ENST00000450128 991 ntBASIC30.29■■■□□ 2.44
IFT140Q96RY7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 AC018845.2-201ENST00000568326 409 ntBASIC30.29■■■□□ 2.44
IFT140Q96RY7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC30.29■■■□□ 2.44
IFT140Q96RY7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
IFT140Q96RY7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
IFT140Q96RY7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
IFT140Q96RY7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
IFT140Q96RY7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 AP000344.2-201ENST00000512987 629 ntBASIC30.28■■■□□ 2.44
IFT140Q96RY7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
IFT140Q96RY7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
IFT140Q96RY7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 PMPCAP1-201ENST00000508114 1576 ntBASIC30.28■■■□□ 2.44
IFT140Q96RY7 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 GPR89P-201ENST00000407924 1495 ntBASIC30.28■■■□□ 2.44
IFT140Q96RY7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC30.28■■■□□ 2.44
IFT140Q96RY7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
IFT140Q96RY7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC30.27■■■□□ 2.44
IFT140Q96RY7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
IFT140Q96RY7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC30.27■■■□□ 2.44
IFT140Q96RY7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
IFT140Q96RY7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC30.27■■■□□ 2.44
IFT140Q96RY7 AC108073.2-201ENST00000464002 357 ntBASIC30.27■■■□□ 2.44
IFT140Q96RY7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
IFT140Q96RY7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
IFT140Q96RY7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC30.27■■■□□ 2.44
IFT140Q96RY7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
IFT140Q96RY7 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
IFT140Q96RY7 CD9-202ENST00000382515 1229 ntTSL 5 BASIC30.26■■■□□ 2.44
IFT140Q96RY7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
IFT140Q96RY7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC30.26■■■□□ 2.44
IFT140Q96RY7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
IFT140Q96RY7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
IFT140Q96RY7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
IFT140Q96RY7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
IFT140Q96RY7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
IFT140Q96RY7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC30.26■■■□□ 2.43
IFT140Q96RY7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
IFT140Q96RY7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
IFT140Q96RY7 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
IFT140Q96RY7 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 METTL23-205ENST00000588302 925 ntTSL 5 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
IFT140Q96RY7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
IFT140Q96RY7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
IFT140Q96RY7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
IFT140Q96RY7 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC30.25■■■□□ 2.43
IFT140Q96RY7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms