Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.61■□□□□ 0.41
VMP1Q96GC9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 FEM1AP3-201ENST00000403722 1741 ntBASIC17.6■□□□□ 0.41
VMP1Q96GC9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.6■□□□□ 0.41
VMP1Q96GC9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VMP1Q96GC9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 AC139713.2-201ENST00000641328 2723 ntBASIC17.59■□□□□ 0.41
VMP1Q96GC9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 KRT8P3-201ENST00000519669 1449 ntBASIC17.59■□□□□ 0.41
VMP1Q96GC9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VMP1Q96GC9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 WIZP1-201ENST00000531444 2299 ntBASIC17.59■□□□□ 0.41
VMP1Q96GC9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 AC006333.2-201ENST00000607957 2099 ntBASIC17.59■□□□□ 0.41
VMP1Q96GC9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VMP1Q96GC9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 IRX1P1-201ENST00000438849 1838 ntBASIC17.58■□□□□ 0.41
VMP1Q96GC9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.58■□□□□ 0.41
VMP1Q96GC9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
VMP1Q96GC9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VMP1Q96GC9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VMP1Q96GC9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VMP1Q96GC9 TMPOP1-202ENST00000424642 1267 ntBASIC17.58■□□□□ 0.4
VMP1Q96GC9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VMP1Q96GC9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 AC010203.1-204ENST00000548782 407 ntBASIC17.58■□□□□ 0.4
VMP1Q96GC9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 RN7SL850P-201ENST00000579959 291 ntBASIC17.58■□□□□ 0.4
VMP1Q96GC9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms