Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 MIR149-201ENST00000384879 89 ntBASIC18.67■□□□□ 0.58
CHFRQ96EP1 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 POM121L3P-201ENST00000419331 1163 ntBASIC18.67■□□□□ 0.58
CHFRQ96EP1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 AC006538.3-201ENST00000612495 578 ntBASIC18.67■□□□□ 0.58
CHFRQ96EP1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 SDHAP2-201ENST00000455183 2001 ntBASIC18.67■□□□□ 0.58
CHFRQ96EP1 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHFRQ96EP1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.67■□□□□ 0.58
CHFRQ96EP1 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 AC113404.2-201ENST00000507884 177 ntBASIC18.66■□□□□ 0.58
CHFRQ96EP1 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.66■□□□□ 0.58
CHFRQ96EP1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CHFRQ96EP1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.66■□□□□ 0.58
CHFRQ96EP1 AC114341.1-201ENST00000618070 349 ntBASIC18.66■□□□□ 0.58
CHFRQ96EP1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CHFRQ96EP1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.66■□□□□ 0.58
CHFRQ96EP1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.66■□□□□ 0.58
CHFRQ96EP1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHFRQ96EP1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 AL024508.2-201ENST00000607749 1894 ntBASIC18.65■□□□□ 0.58
CHFRQ96EP1 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 AL590627.1-203ENST00000421194 1026 ntBASIC18.65■□□□□ 0.58
CHFRQ96EP1 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 AC096582.2-201ENST00000510860 516 ntBASIC18.65■□□□□ 0.58
CHFRQ96EP1 SLC25A1P1-201ENST00000528351 927 ntBASIC18.65■□□□□ 0.58
CHFRQ96EP1 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 AL591684.3-201ENST00000605187 298 ntBASIC18.65■□□□□ 0.58
CHFRQ96EP1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.65■□□□□ 0.58
CHFRQ96EP1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHFRQ96EP1 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHFRQ96EP1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHFRQ96EP1 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHFRQ96EP1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHFRQ96EP1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHFRQ96EP1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHFRQ96EP1 AC009102.3-201ENST00000623118 1491 ntBASIC18.64■□□□□ 0.57
CHFRQ96EP1 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
CHFRQ96EP1 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHFRQ96EP1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CHFRQ96EP1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHFRQ96EP1 FAM197Y8-203ENST00000450145 560 ntBASIC18.63■□□□□ 0.57
CHFRQ96EP1 AC068472.1-201ENST00000474589 881 ntBASIC18.63■□□□□ 0.57
CHFRQ96EP1 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms