Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHROOM3Q8TF72 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 HLA-F-220ENST00000434407 884 ntBASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SHROOM3Q8TF72 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 AL031133.1-201ENST00000406807 723 ntBASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 AC116407.4-201ENST00000623319 1061 ntBASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 AC011558.1-201ENST00000623459 338 ntBASIC18.72■□□□□ 0.59
SHROOM3Q8TF72 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 AC093010.1-201ENST00000473625 1624 ntBASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 HCG4P8-203ENST00000443049 980 ntBASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 AL096828.2-201ENST00000567259 1965 ntBASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHROOM3Q8TF72 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms