Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP48Q86UV5 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
USP48Q86UV5 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
USP48Q86UV5 AC006333.2-201ENST00000607957 2099 ntBASIC22.5■■□□□ 1.19
USP48Q86UV5 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 AL590627.1-203ENST00000421194 1026 ntBASIC22.49■■□□□ 1.19
USP48Q86UV5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC22.49■■□□□ 1.19
USP48Q86UV5 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC22.49■■□□□ 1.19
USP48Q86UV5 TPM1-218ENST00000559281 851 ntTSL 5 BASIC22.49■■□□□ 1.19
USP48Q86UV5 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC22.49■■□□□ 1.19
USP48Q86UV5 NME4-212ENST00000621774 904 ntTSL 3 BASIC22.49■■□□□ 1.19
USP48Q86UV5 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
USP48Q86UV5 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
USP48Q86UV5 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
USP48Q86UV5 TEX21P-204ENST00000641479 1693 ntBASIC22.49■■□□□ 1.19
USP48Q86UV5 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
USP48Q86UV5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
USP48Q86UV5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC22.48■■□□□ 1.19
USP48Q86UV5 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC22.48■■□□□ 1.19
USP48Q86UV5 AC104819.1-201ENST00000504587 486 ntBASIC22.48■■□□□ 1.19
USP48Q86UV5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC22.48■■□□□ 1.19
USP48Q86UV5 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC22.48■■□□□ 1.19
USP48Q86UV5 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.48■■□□□ 1.19
USP48Q86UV5 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP48Q86UV5 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC22.48■■□□□ 1.19
USP48Q86UV5 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
USP48Q86UV5 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
USP48Q86UV5 PENK-208ENST00000523051 772 ntTSL 5 BASIC22.47■■□□□ 1.19
USP48Q86UV5 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC22.47■■□□□ 1.19
USP48Q86UV5 AF228730.7-201ENST00000641842 219 ntBASIC22.47■■□□□ 1.19
USP48Q86UV5 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.47■■□□□ 1.19
USP48Q86UV5 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC22.47■■□□□ 1.19
USP48Q86UV5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.47■■□□□ 1.19
USP48Q86UV5 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.47■■□□□ 1.19
USP48Q86UV5 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC22.47■■□□□ 1.19
USP48Q86UV5 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC22.47■■□□□ 1.19
USP48Q86UV5 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP48Q86UV5 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
USP48Q86UV5 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
USP48Q86UV5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.46■■□□□ 1.19
USP48Q86UV5 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
USP48Q86UV5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC22.46■■□□□ 1.19
USP48Q86UV5 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC22.46■■□□□ 1.19
USP48Q86UV5 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
USP48Q86UV5 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC22.46■■□□□ 1.19
USP48Q86UV5 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP48Q86UV5 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms